課程信息
4.6
134 ratings
26 reviews
Neurohacking describes how to use the R programming language (https://cran.r-project.org/) and its associated package to perform manipulation, processing, and analysis of neuroimaging data. We focus on publicly-available structural magnetic resonance imaging (MRI). We discuss concepts such as inhomogeneity correction, image registration, and image visualization. By the end of this course, you will be able to: Read/write images of the brain in the NIfTI (Neuroimaging Informatics Technology Initiative) format Visualize and explore these images Perform inhomogeneity correction, brain extraction, and image registration (within a subject and to a template)....
Globe

100% 在線課程

立即開始,按照自己的計劃學習。
Calendar

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Intermediate Level

中級

Clock

建議:4 weeks of study, 2-4 hours/week

完成時間大約為11 小時
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English

字幕:English

您將獲得的技能

Image ProcessingBrainR ProgrammingNeurology
Globe

100% 在線課程

立即開始,按照自己的計劃學習。
Calendar

可靈活調整截止日期

根據您的日程表重置截止日期。
Intermediate Level

中級

Clock

建議:4 weeks of study, 2-4 hours/week

完成時間大約為11 小時
Comment Dots

English

字幕:English

教學大綱 - 您將從這門課程中學到什麼

1

章節
Clock
完成時間為 1 小時

Introduction

...
Reading
3 個視頻(共 30 分鐘), 1 個閱讀材料, 1 個測驗
Video3 個視頻
Introduction11分鐘
Structural MRI and R12分鐘
Reading1 個閱讀材料
Syllabus10分鐘
Quiz1 個練習
Theme 1 Quiz16分鐘

2

章節
Clock
完成時間為 2 小時

Neuroimaging: Formats and Visualization

In this section, we will discuss different formats that brain images come in, as well as some of the commonly done magnetic resonance imaging (MRI) scans....
Reading
7 個視頻(共 74 分鐘), 6 個測驗
Video7 個視頻
The NIfTI Format9分鐘
Basic Visualization 19分鐘
Basic Visualization 29分鐘
Basic Data Manipulation9分鐘
Transformations and Smoothing14分鐘
Basic MRI Contrasts9分鐘
Quiz6 個練習
Theme 2 Lecture 1 Quiz10分鐘
Theme 2 Lecture 2 Quiz10分鐘
Theme 2 Lecture 3 Quiz10分鐘
Theme 2 Lecture 4 Quiz10分鐘
Theme 2 Lecture 5 Quiz10分鐘
Theme 2 Lecture 6 Quiz10分鐘

3

章節
Clock
完成時間為 3 小時

Image Processing

In this section, we will discuss the steps done to process brain MRI data. We will discuss inhomogeneity correction, brain extraction or skull stripping, and various image registration techniques....
Reading
9 個視頻(共 71 分鐘), 9 個測驗
Video9 個視頻
Registration15分鐘
fslr: System Requirements8分鐘
Bias Field Correction Using fslr3分鐘
Brain Extraction using fslr5分鐘
Image Registration Using fslr5分鐘
Installing ANTsR5分鐘
Basic Data Manipulation with ANTsR4分鐘
Pre-Processing with ANTSR7分鐘
Quiz9 個練習
Theme 3 Quiz 110分鐘
Theme 3 Quiz 210分鐘
Theme 3 Quiz 312分鐘
Theme 3 Quiz 410分鐘
Theme 3 Quiz 510分鐘
Theme 3 Quiz 610分鐘
Theme 3 Quiz 710分鐘
Theme 3 Quiz 810分鐘
Theme 3 Quiz 910分鐘

4

章節
Clock
完成時間為 3 小時

Extended Image Processing

In this section, we will discuss the different types of registration and how one would go through processing a multi-sequence MRI scan, as well as wrapper functions that make the process much easier. We also cover interactive exploration of brain image data and tissue-level (white/gray matter and cerebrospinal fluid (CSF)) segmentation from a T1-weighted image....
Reading
11 個視頻(共 101 分鐘), 1 個閱讀材料, 10 個測驗
Video11 個視頻
Co-Registration using fslr9分鐘
Co-Registration using ANTsR9分鐘
Wrapper Functions for Processing Pipelines8分鐘
Across-Visit Co-Registration of T1 Images6分鐘
Rigid Registration to a Template8分鐘
Affine Registration of T1 to Template4分鐘
Nonlinear Registration of T1 to Template6分鐘
Getting ROI Anatomic Information from Non-Linear Registration12分鐘
Tissue-Level Segmentation7分鐘
Papayar: Interactively Viewing Images in R22分鐘
Reading1 個閱讀材料
Papayar Script10分鐘
Quiz10 個練習
Theme 4 Quiz 110分鐘
Theme 4 Quiz 210分鐘
Theme 4 Quiz 36分鐘
Theme 4 Quiz 410分鐘
Theme 4 Quiz 510分鐘
Theme 4 Quiz 610分鐘
Theme 4 Quiz 710分鐘
Theme 4 Quiz 810分鐘
Theme 4 Quiz 910分鐘
Theme 4 Quiz 1010分鐘
4.6

熱門審閱

創建者 BRFeb 9th 2017

I like that this course goes through most necessary steps, my only suggest would be to have one additional week where you go through everything all together, and then do some simple group analysis.

創建者 ANJul 18th 2017

Perfect! Precise to the subject and provides a lot of hands-on details, which is, unfortunately, something that most other similar courses don't do. Absolutely loved it!

講師

Dr. Elizabeth Sweeney

Rice Academy Postdoctoral Fellow
Biostatistics

Ciprian M. Crainiceanu

Professor
Biostatstics

John Muschelli III

Assistant Scientist
Biostatistics

關於 Johns Hopkins University

The mission of The Johns Hopkins University is to educate its students and cultivate their capacity for life-long learning, to foster independent and original research, and to bring the benefits of discovery to the world....

常見問題

  • Once you enroll for a Certificate, you’ll have access to all videos, quizzes, and programming assignments (if applicable). Peer review assignments can only be submitted and reviewed once your session has begun. If you choose to explore the course without purchasing, you may not be able to access certain assignments.

  • When you purchase a Certificate you get access to all course materials, including graded assignments. Upon completing the course, your electronic Certificate will be added to your Accomplishments page - from there, you can print your Certificate or add it to your LinkedIn profile. If you only want to read and view the course content, you can audit the course for free.

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