This course will assist you with recreating work that a previous coworker completed, revisiting a project you abandoned some time ago, or simply reproducing a document with a consistent format and workflow. Incomplete information about how the work was done, where the files are, and which is the most recent version can give rise to many complications. This course focuses on the proper documentation creation process, allowing you and your colleagues to easily reproduce the components of your workflow. Throughout this course, you'll receive helpful demonstrations of RStudio and the R Markdown language and engage in active learning opportunities to help you build a professional online portfolio.
教學大綱 - 您將從這門課程中學到什麼
週
1完成時間為 5 小時
Introduction to Reproducible Research and Dynamic Documentation
This module provides an introduction to the concepts surrounding reproducibility and the Open Science movement, RStudio and GitHub, and foundational cases and authors in the field.
11 個視頻 （總計 75 分鐘）, 6 個閱讀材料, 2 個測驗
11 個視頻
Welcome to Week 1!3分鐘
History and Importance of Reproducibility5分鐘
Dynamic Documentation and Literate Programming5分鐘
Components and Examples of Reproducibility8分鐘
R and RStudio Introduction8分鐘
Git and Github - Part 112分鐘
Git and Github - Part 213分鐘
Git and Github - Part 36分鐘
Creating Your First Document9分鐘
Wrap-Up41
6 個閱讀材料
Course Outline and Grading Information5分鐘
Articles, Resources, and File Organization Examples1小時
[Lecture Prep] - Links for R and RStudio1分鐘
R and RStudio Resources30分鐘
[Lecture Prep] - GIT and GitHub5分鐘
Books on Reproducibility and Tools of the Trade45分鐘
2 個練習
Practice20分鐘
Week 130分鐘
週
2完成時間為 4 小時
R Markdown: Syntax, Document, and Presentation Formats
This module explores the R Markdown syntax to format and customize the layout of presentations or reports and will also look at inserting and creating objects such as tables, images, or video within documents.
8 個視頻 （總計 83 分鐘）, 11 個閱讀材料, 2 個測驗
8 個視頻
Introduction to R Markdown and the YAML Header10分鐘
R Markdown Syntax13分鐘
Figures, Tables, and Equations14分鐘
Images, Videos, and Footnotes9分鐘
Presentation Formats16分鐘
Book Format16分鐘
Wrap-Up1分鐘
11 個閱讀材料
[Lecture Prep] - Links for R Markdown and YAML1分鐘
[Lecture Prep] - R Markdown File1分鐘
R Markdown Resources30分鐘
Resources for Tables and Equations25分鐘
[Lecture Prep] - Media and R Markdown Files1分鐘
Resource for Embedding Videos5分鐘
[Lecture Prep] - R Markdown File1分鐘
Resources for the Presentation Format25分鐘
[Lecture Prep] - Link for Bookdown Demo3分鐘
Resources for the Book Format25分鐘
[Graded Quiz Prep] - Week 2 Instructions5分鐘
2 個練習
Practice20分鐘
Week 240分鐘
週
3完成時間為 4 小時
R Markdown Templates: Processing and Customizing
This module goes further with R Markdown to help turn documents, reports, and presentations into templates for easier automation, reproducibility, and customization.
9 個視頻 （總計 93 分鐘）, 6 個閱讀材料, 2 個測驗
9 個視頻
Customizing an HTML Document20分鐘
Customizing a WORD Document8分鐘
Customizing Other Document Formats10分鐘
Working with R Packages12分鐘
Building a Document Template, Part 112分鐘
Building a Document Template, Part 210分鐘
Adding Parameters in a Document Template15分鐘
Wrap-Up58
6 個閱讀材料
[Lecture Prep] - CSS File1分鐘
Note on MD files3分鐘
Resources for Customizing Documents40分鐘
[Lecture Prep] - R Script File1分鐘
[Lecture Prep] - Code File1分鐘
Resources for Parameters and Template Development1小時
2 個練習
Practice20分鐘
Week 330分鐘
週
4完成時間為 3 小時
Leveraging Custom Templates from Leading Scientific Journals
This module delves into custom templates available for websites, books, and scientific publishers, such as Elsevier and the IEEE, with the chance to create your first R Package.
6 個視頻 （總計 47 分鐘）, 3 個閱讀材料, 2 個測驗
6 個視頻
Examples and Demo of Existing Templates10分鐘
Exploring R Packages and Their Components and Files12分鐘
Create an R Markdown Template and Share It10分鐘
Create an R Package with an R Markdown Template11分鐘
Wrap-Up44
3 個閱讀材料
Custom Template Packages and References1小時
Resources for Packages and Forking Repositories30分鐘
[Lecture Prep] - Code File1分鐘
2 個練習
Practice20分鐘
Week 430分鐘
4.7
4 個審閱來自Reproducible Templates for Analysis and Dissemination 的熱門評論
Perfect amount of info for beginner and/or intermediate R user who has not taken full advantage of its capabilities (yet)
講師
Melinda Higgins
Associate Research Professor/Senior BiostatisticianSchool of Nursing
關於 艾莫利大学
Emory University, located in Atlanta, Georgia, is one of the world's leading research universities. Its mission is to create, preserve, teach and apply knowledge in the service of humanity.
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