This course provides demonstrations and exercises for performing common genomics-based analysis tasks of bacterial sequence data. It uses PATRIC, the PathoSystems Resource Integration Center, as the platform for analysis. PATRIC is the NIH/NIAID-funded bacterial Bioinformatics Resource Center, providing comprehensive bacterial genomic data with integrated analysis tools and visualizations. PATRIC also provides a private workspace where users can upload and analyze their own data.
提供方
Bacterial Bioinformatics
弗吉尼亚大学課程信息
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中級
This class is geared towards biologists, bacteriologists, and bioinformaticians with a basic knowledge of comparative genomics.
完成時間大約為14 小時
英語（English）
字幕：法語（French）, （歐洲人講的）葡萄牙語, 俄語（Russian）, 英語（English）, 西班牙語（Spanish）
您將學到的內容有
Learn how to assemble a bacterial genome
Learn how to annotate a bacterial genome
Learn how to generate a phylogenetic tree from a set of bacterial genomes
Learn how to perform basic comparative analyses of a set of bacterial genomes
可靈活調整截止日期
根據您的日程表重置截止日期。
100% 在線
立即開始，按照自己的計劃學習。
中級
This class is geared towards biologists, bacteriologists, and bioinformaticians with a basic knowledge of comparative genomics.
完成時間大約為14 小時
英語（English）
字幕：法語（French）, （歐洲人講的）葡萄牙語, 俄語（Russian）, 英語（English）, 西班牙語（Spanish）
提供方
弗吉尼亚大学
A premier institution of higher education, The University of Virginia offers outstanding academics, world-class faculty, and an inspiring, supportive environment. Founded by Thomas Jefferson in 1819, the University is guided by his vision of discovery, innovation, and development of the full potential of students from all walks of life. Through these courses, global learners have an opportunity to study with renowned scholars and thought leaders.
授課大綱 - 您將從這門課程中學到什麼
完成時間為 1 小時
Introduction
This lesson provides an introduction to PATRIC, the PathoSystems Resource Integration Center, a Bioinformatics Resource Center dedicated to supporting bacterial research. PATRIC provides comprehensive bacterial genomic data with integrated analysis tools and visualizations. PATRIC also provides a private workspace where users can upload and analyze their own data. PATRIC will serve as the platform for the analysis methods covered in this module.
完成時間為 1 小時
7 個視頻 （總計 42 分鐘）
完成時間為 1 小時
Assembly
This lesson provides step-by-step instructions for assembling a genome from a set of bacterial sequence reads using the PATRIC Genome Assembly Service. Exercises are included to enhance comprehension and build proficiency in using the assembly process.
完成時間為 1 小時
7 個視頻 （總計 49 分鐘）
完成時間為 2 小時
Annotation
This lesson provides step-by-step instructions for annotating a genome from contigs using the PATRIC Genome Annotation Service. Exercises are included to enhance comprehension and build proficiency in using the annotation process.
完成時間為 2 小時
7 個視頻 （總計 77 分鐘）
完成時間為 2 小時
Comprehensive Genome Analysis
This lesson provides step-by-step instructions for assembling, annotating, and performing an automated analysis of a genome from a set of bacterial sequence reads using the PATRIC Comprehensive Genome Analysis Service. Exercises are included to enhance comprehension and build proficiency in using the service.
完成時間為 2 小時
10 個視頻 （總計 101 分鐘）
審閱
- 5 stars76.74%
- 4 stars16.27%
- 3 stars4.65%
- 1 star2.32%
來自BACTERIAL BIOINFORMATICS的熱門評論
由 PP 提供2020年12月23日
very useful course , can solve a lot of problem in bacterium genome analysis easily
由 NG 提供2022年2月14日
it was very informative course and i enjoyed doing home works and assessments.
thank you
Regards
Neeraja
由 GT 提供2022年2月4日
i appreciate the dedication and design of the course. it so practical and friendly. thank You Dr. Rebecca.
由 WH 提供2021年12月20日
I appreciate the instructors for this amazing course that sharpen my skills in the bacterial genome analysis.
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